Epidemiological situation of HPAI viruses from clade in Europe since October 2016: situation as of 10th April 2017

International Animal Health Epidemic Intelligence (VSI) team – ESA Platform – France
NRL Avian Influenza, Anses laboratory Ploufragan – France
National Office for Hunting and Wildlife – France
Sources: Data updated on 09/04/2017 (included) ADNS/FAO/OIE, DGAL (General Directorate of Food – French Ministry of Agriculture)

This is a translation of a published report. The French version of this report is available here.

Three related HPAI H5 viruses from clade – H5N8, H5N5 and H5N6 – are currently circulating in Europe[1]. The ADNS tool is not adapted to the notification of new subtypes like H5N8, H5N5 or H5N6, leading countries to report the outbreaks as “H5Nx” with the possibility of mentioning the subtype in the comments section, which some countries do. Taking into account these comments, the ADNS notifications are as follows: H5Nx (n=439), H5N5 (n=21), H5N8 (n=2,180) and H5N6 (n=1). The HPAI viruses in general will be analyzed in this report. This analysis takes into account modifications following first notifications that are sometimes brought to ADNS notifications, which for example might specify the subtype for some H5Nx outbreaks (which might be later notified as H5N5, H5N8 or H5N6).

Since the last situation report on 27th March 2017 (two weeks ago), 73 new outbreaks or cases of HPAI viruses from A/goose/Guangdong/1/1996 lineage clade were reported in Europe (European Union – EU – and Switzerland), mainly in Germany (23 new H5N8 outbreaks in wild birds and 9 in poultry farms) and in France (12 new H5N8 outbreaks in poultry farms). The total number of outbreaks and cases of HPAI clade reported in Europe continues to increase and is now 2,641 among which 1,493 in wild birds (77 species affected), 1,101 in poultry farms, and 47 in captive birds (Tables 1 & 2-5). We can, however, notice a decrease in the number of new outbreaks over the past three weeks (Figure 1).

A first case of HPAI H5Nx has been reported in Bosnia-Herzegovina on 28th March 2017 in a wild bird found dead (species not mentioned).

Several countries have detected an HPAI H5N5 virus in wild birds (1 case in Germany, 1 in Montenegro, 2 in Italy, 1 in Croatia, 1 in Greece, 2 in Poland, 3 in Slovenia, 1 in Hungary, and 1 in Austria), in poultry farms (3 outbreaks in Germany and 2 outbreaks in Croatia), and in captive birds (1 case in Italy and 1 case in Czech Republic). In addition, the Netherlands reported a case of co-infection with H5N8/H5N5 in wild birds in November 2016. On 1st March 2017, Serbia reported a first case of H5N5 in a mute swan (Cygnus olor) found dead in the North of the country (source: FAO Empres-i). However, all HPAI H5 outbreaks in Serbia are reported to ADNS as “H5Nx” with no details regarding subtype. Therefore, the H5N5 outbreak in Serbia is not shown in the maps or the tables.

A new highly pathogenic avian influenza (HPAI) virus of H5N6 subtype, related to the HPAI H5 viruses from clade currently circulating in Europe, has been detected in Greece in a poultry farm (species not mentioned) (see report from 6th March – link). This outbreak was initially declared as HP H5N8 on 16th February, and laboratory confirmation of HP H5N6 subtype was done on 2nd March.

An application enables visualization of the evolution of outbreaks and cases of HPAI in Europe through interactive map and time series, allowing users to select specific data using options and a time cursor (link).

The HP H5N8 virus is also present beyond Europe in the following countries: Israel, Egypt, Tunisia, Iran, Russia, Ukraine, Nigeria, South Korea, Chinese Taipei (commonly known as Taiwan), Uganda, Cameroon, India, Nepal, China, Koweit, and Kazakhstan (source: OIE/FAO). A situation report of the HPAI situation in Africa as of 21st Feb 2017 is available – in French – on the ESA Platform (link).

Table 1: Evolution of number of outbreaks and cases of HPAI viruses from A/goose/Guangdong/1/1996 lineage clade in the European Union and Switzerland and number of countries affected (in brackets) reported from 26 Oct 2016 to 9 April 2017 (included) (sources: OIE/ADNS/DGAL)

Figure 1 shows the pattern of weekly notifications in Europe. The aggregated data for Europe (including Switzerland), with individual country situations varying according to surveillance and epidemiology, shows global trends. At the macroscopic scale, it is interesting to note that the “poultry” and “wild” curves show similar trends, globally parallel, with a slight delay of 2 weeks, the “wild” curve preceding the “poultry” curve. This same delay between outbreaks in wild birds and in farms is observed in the cumulated graph of the number of newly affected countries declaring their first outbreak/case of HPAI (Figure 2).

Figure 1: Number of outbreaks and cases of HPAI viruses from A/goose/Guangdong/1/1996 lineage clade in Europe (EU, Switzerland) per week from 26 October 2016 to 9 April 2017 (included) (sources: ADNS/OIE/DGAL)

Figure 2: Cumulated weekly number of countries that have notified at least one outbreak/case of HPAI from A/goose/Guangdong/1/1996 clade in Europe (EU, Switzerland) from 26 October 2016 to 9 April 2017 (included) (sources: ADNS/OIE/DGAL)

The pattern of these curves is coherent with a contamination of poultry farms by wild birds and seems to suggest an absence of a major evolution of the epizooty in farms, in general in the European continent (which does not exclude particular situations where there could be important localized secondary spread between farms). However, this interpretation should be nuanced as some variations could be due, on one hand, to differences in surveillance pressure depending on bird populations and, on the other, to differences among countries (as for Hungary and France which have notified a high number of outbreaks in poultry farms and much less in wild birds, compared to Germany and Switzerland which have notified a great amount of cases in wild birds but only a few outbreaks in poultry farms). It should be noted that conclusions should not be drawn based on data from the last week due to delays in declarations.

The mortality reported in farms is variable depending on the species, but also for a given species, and is calculated based on a limited number of outbreaks. For mono-species farms, the mortality varied from 0.06 to 33% in Gallus gallus farms, around 20% in turkey farms (but with a 100% mortality rate reported in an outbreak in France), and from 0 to 70% in palmipeds. Although the data must be carefully interpreted (as time of intervention in relation to infection varied, some farms are epidemiologically linked, the beginning of infection is unknown, etc.), it should be noted that this strain appears to have an unusual virulence in breeding palmipeds.

The 77 different species of birds infected in the avifauna in Europe, with their families, are:
- Accipitridae: Eagle spp, Eurasian Buzzard, Harris’s Hawk, Northern Goshawk, Rough-legged Buzzard, Sparrow Hawk, White-tailed Eagle
- Anatidae: Northern Pintail, Common Teal, Common Pochard, Tufted Duck, Common Goldeneye, Mallard, Eurasian Wigeon, Gadwall, Whooper Swan, Mute Swan, Tundra Swan, Northern Pintail, Greylag Goose, Bean Goose, Lesser White-fronted Goose, White-fronted Goose, Pink-footed Goose, Greater Scaup, Dark-bellied Brant, Canada Goose, Barnacle Goose, Red-breasted Goose, Egyptian Goose, Black Swan, Common Shelduck, Common Eider, Red-crested Pochard, Common Scoter, Common Merganser, Swan Goose, Muscovy Duck
- Ardeidae: Eurasian Bittern, Grey Heron, Great Egret, Cattle Egret
- Ciconiidae: White Stork
- Colombidae: Collared Dove, Common Wood Pigeon
- Corvidae: Eurasian Magpie, Hooded Crow, Common Raven, Carrion Crow
- Dromaiidae: Emu
- Falconidae: Peregrine Falcon, Saker Falcon, Common Krestel
- Laridae: Black-headed Gull, Herring Gull, Mew Gull, Great black-backed Gull, Yellow-legged Gull, Lesser black-backed Gull, Common Tern
- Pelecanidae: Great white Pelican
- Phalacrocoracidae: Great Cormorant, Pygmy Cormorant
- Podicipedidae: Great-crested Grebe, Little Grebe
- Psittacidae: African grey Parrot
- Rallidae: Common Moorhen, Crested Coot, Eurasian Coot
- Scolopacidae: Curlew spp, Green Sandpiper
- Strigidae: Eagle Owl, Ural Owl
- Sturnidae: Common starling
- Turdidae: Common Blackbird, Song Thrush, Fieldfare

Figure 3: Map of outbreaks and cases of HPAI H5N8 reported in the European Union and Switzerland from 26 Oct 2016 to 9 April 2017 (included) (sources: OIE/ADNS/DGAL).

Figure 4: Map of outbreaks and cases of HPAI H5N5 reported in Europe from 26 Oct 2016 to 9 April 2017 (included) (sources: OIE/ADNS/DGAL).

Figure 5: Map of outbreaks and cases of HPAI H5N6 reported in Europe from 26 Oct 2016 to 9 April 2017 (included) (sources: OIE/ADNS).